@Article{BRMYAMS21,
  author       = "Bugnon, L. A. and Raad, J. and Merino, G. and Yones, C. and Ariel, F. and Milone, D. H. and Stegmayer, G.",
  title        = "Deep Learning for the discovery of new pre-miRNAs: helping the fight against COVID-19",
  journal      = "Machine Learning with Applications",
  volume       = "6",
  year         = "2021",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2021/BRMYAMS21"
}
@Article{YRBMS21,
  author       = "Yones, C. and Raad, J. and Bugnon, L. A. and Milone, D. H. and Stegmayer, G.",
  title        = "High precision in microRNA prediction: a novel genome-wide approach with convolutional deep residual networks",
  journal      = "Computers in Biology and Medicine",
  volume       = "134",
  year         = "2021",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2021/YRBMS21"
}
@Article{BYRGRMPDMS20,
  author       = "Bugnon, L. A. and Yones, C. and Raad, J. and Gerard, M. and Rubiolo, M. and Merino, G. and Pividori, M. and Di Persia, L. and Milone, D. H. and Stegmayer, G.",
  title        = "DL4papers: a deep learning approach for the automatic interpretation of scientific articles",
  journal      = "Oxford Bioinformatics",
  year         = "2020",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2020/BYRGRMPDMS20"
}
@Article{BYMS20,
  author       = "Bugnon, L. A. and Yones, C. and Milone, D. H. and Stegmayer, G.",
  title        = "Genome-wide discovery of pre-miRNAs: comparison of recent approaches based on machine learning",
  journal      = "Oxford Briefings in Bioinformatics",
  year         = "2020",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2020/BYMS20"
}
@Article{YMKSM20,
  author       = "Yones, C. and Macchiaroli, N. and Kamenetzky, L. and Stegmayer, G. and Milone, D. H.",
  title        = "HextractoR: an R package for automatic extraction of hairpins from genome-wide data",
  journal      = "bioRxiv",
  year         = "2020",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2020/YMKSM20"
}
@Article{MRBYKCAMS20,
  author       = "Merino, G. and Raad, J. and Bugnon, L. A. and Yones, C. and Kamenetzky, L. and Claus, J. and Ariel, F. and Milone, D. H. and Stegmayer, G.",
  title        = "Novel SARS-CoV-2 encoded small RNAs in the passage to humans",
  journal      = "Bioinformatics",
  month        = "11",
  year         = "2020",
  note         = "btaa1002",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2020/MRBYKCAMS20"
}
@Article{RLYASMM19,
  author       = "Ré, Delfina A. and Lang, Patricia L.M. and Yones, C. and Arce, Agustín and Stegmayer, G. and Milone, D. H. and Manavella, Pablo A.",
  title        = "Alternative usage of miRNA-biogenesis co-factors in plants at low temperatures",
  journal      = "Development",
  year         = "2019",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2019/RLYASMM19"
}
@InProceedings{BYRGRMPDMS19,
  author       = "Bugnon, L. A. and Yones, C. and Raad, J. and Gerard, M. and Rubiolo, M. and Merino, G. and Pividori, M. and Di Persia, L. and Milone, D. H. and Stegmayer, G.",
  title        = "Deep learning for reading and interpreting biomedical papers",
  booktitle    = "A2B2C 10th Meeting",
  year         = "2019",
  address      = "Mendoza, Argentina",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2019/BYRGRMPDMS19"
}
@InProceedings{BYMS19a,
  author       = "Bugnon, L. A. and Yones, C. and Milone, D. H. and Stegmayer, G.",
  title        = "Deep neural architectures for highly imbalanced data in bioinformatics",
  booktitle    = "Argentine Symposium on Data Science and Big Data, AGRANDA 2019, 48º JAIIO",
  year         = "2019",
  address      = "Universidad Nacional de Salta. Salta, Argentina",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2019/BYMS19a"
}
@Article{BYMS19,
  author       = "Bugnon, L. A. and Yones, C. and Milone, D. H. and Stegmayer, G.",
  title        = "Deep neural architectures for highly imbalanced data in bioinformatics",
  journal      = "IEEE Transactions on Neural Networks and Learning Systems",
  year         = "2019",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2019/BYMS19"
}
@Article{BYRMS19,
  author       = "Bugnon, L. A. and Yones, C. and Raad, J. and Milone, D. H. and Stegmayer, G.",
  title        = "Genome-wide hairpins datasets of animals and plants for novel miRNA prediction",
  journal      = "Data in Brief (in press)",
  year         = "2019",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2019/BYRMS19"
}
@InProceedings{YBRMS19,
  author       = "Yones, C. and Bugnon, L. A. and Raad, J. and Milone, D. H. and Stegmayer, G.",
  title        = "MicroRNA prediction from genome-wide data with deep learning: a novel approach based on convolutional residual networks",
  booktitle    = "A2B2C 10th Meeting",
  year         = "2019",
  address      = "Mendoza, Argentina",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2019/YBRMS19"
}
@Article{MCKYBBOR18,
  author       = "Macchiaroli, N. and Cucher , M and Kamenetzky, L. and Yones, C. and Bugnon, L. A. and Berriman, M. and Olson, P. and Rosenzvit, M. C.",
  title        = "Identification and expression profiling of microRNAs in Hymenolepis.",
  journal      = "International Journal for Parasitology",
  year         = "2018",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2018/MCKYBBOR18"
}
@Article{SDRGPYBRRM18,
  author       = "Stegmayer, G. and Di Persia, L. and Rubiolo, M. and Gerard, M. and Pividori, M. and Yones, C. and Bugnon, L. A. and Rodriguez, T. and Raad, J. and Milone, D. H.",
  title        = "Predicting novel microRNA: a comprehensive comparison of machine learning approaches",
  journal      = "Briefings in Bioinformatics",
  year         = "2018",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2018/SDRGPYBRRM18"
}
@InBook{SYKMM17,
  author       = "Stegmayer, G. and Yones, C. and Kamenetzky, L. and Macchiaroli, N. and Milone, D. H.",
  title        = "Computational prediction of novel miRNAs from genome-wide data",
  chapter      = "2",
  pages        = "29--37",
  year         = "2017",
  publisher    = "Springer New York",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2017/SYKMM17"
}
@Article{YSM17,
  author       = "Yones, C. and Stegmayer, G. and Milone, D. H.",
  title        = "Genome-wide pre-miRNA discovery from few labeled examples",
  journal      = "Bioinformatics",
  year         = "2017",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2017/YSM17"
}
@Article{SYKM17,
  author       = "Stegmayer, G. and Yones, C. and Kamenetzky, L. and Milone, D. H.",
  title        = "High class-imbalance in pre-miRNA prediction: a novel approach based on deepSOM",
  journal      = "IEEE/ACM Trans. on Comp. Biology and Bioinformatics",
  number       = "6",
  pages        = "1316--1326",
  year         = "2017",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2017/SYKM17"
}
@InProceedings{YSKM16,
  author       = "Yones, C. and Stegmayer, G. and Kamenetzky, L. and Milone, D. H.",
  title        = "Automatic extraction of hairpin sequences from genome-wide data",
  booktitle    = "4th ISCB-LA Bioinformatics Conference",
  month        = "nov",
  year         = "2016",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2016/YSKM16"
}
@Article{KSMMYM16,
  author       = "Kamenetzky, L. and Stegmayer, G. and Maldonado, L. and Macchiaroli, N. and Yones, C. and Milone, D. H.",
  title        = "MicroRNA discovery in the human parasite Echinococcus multilocularis from genome-wide data",
  journal      = "Genomics",
  number       = "6",
  volume       = "107",
  pages        = "274--280",
  year         = "2016",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2016/KSMMYM16"
}
@InProceedings{SYKMPRM16,
  author       = "Stegmayer, G. and Yones, C. and Kamenetzky, L. and Macchiaroli, N. and Perez, M. and Rosenzvit, M. C. and Milone, D. H.",
  title        = "Novel microRNA discovery from genome-wide data: a computational pipeline with unsupervised machine learning",
  booktitle    = "4th ISCB-LA Bioinformatics Conference",
  year         = "2016",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2016/SYKMPRM16"
}
@Article{YSKM15a,
  author       = "Yones, C. and Stegmayer, G. and Kamenetzky, L. and Milone, D. H.",
  title        = "miRNAfe: a comprehensive tool for feature extraction in microRNA prediction",
  journal      = "BioSystems",
  volume       = "138",
  pages        = "1--5",
  month        = "oct",
  year         = "2015",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2015/YSKM15a"
}
@InProceedings{YSKM15,
  author       = "Yones, C. and Stegmayer, G. and Kamenetzky, L. and Milone, D. H.",
  title        = "miRNAfe: a tool for feature extraction in pre-miRNA prediction",
  booktitle    = "VI Argentinian Conference on Bioinformatics and Computational Biology",
  month        = "oct",
  year         = "2015",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2015/YSKM15"
}
@InProceedings{YSM15,
  author       = "Yones, C. and Stegmayer, G. and Milone, D. H.",
  title        = "miRNAss: a semi-supervised approach for microRNA prediction",
  booktitle    = "VI Argentinian Conference on Bioinformatics and Computational Biology",
  month        = "oct",
  year         = "2015",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2015/YSM15"
}
@MastersThesis{YM14,
  author       = "Yones, C. and Milone, D. H.",
  title        = "Desarrollo de una biblioteca de extracción de características de datos biológicos secuenciales. (Undergraduate project) ",
  school       = "Facultad de Ingeniería y Ciencias Hídricas - Universidad Nacional del Litoral.",
  year         = "2014",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2014/YM14"
}
@InProceedings{RYGAM12,
  author       = "Rojas Fredini, E. and Yones, C. and Genzelis, L. and Albornoz, E. M. and Martínez, C. E.",
  title        = "Desarrollo de una interfaz de realidad virtual para videojuegos mediante una cámara Kinect",
  booktitle    = "3er Workshop Argentino sobre Videojuegos (WAVi)",
  pages        = "17--24",
  year         = "2012",
  editor       = "Ediciones UNL",
  address      = "Santa Fe, Argentina",
  note         = "ISBN: 978-987-657-809-7",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2012/RYGAM12"
}