@Article{VBFMS24,
  author       = "Vitale, R. and Bugnon, L. A. and Fenoy, E. and Milone, D. H. and Stegmayer, G.",
  title        = "Evaluating large language models for annotating proteins",
  journal      = "Briefings in Bioinformatics",
  number       = "3",
  volume       = "25",
  year         = "2024",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2024/VBFMS24"
}
@Article{ESM24,
  author       = "Edera, A. and Stegmayer, G. and Milone, D. H.",
  title        = "gGN: Representing the Gene Ontology as low-rank Gaussian distributions",
  journal      = "Computers in Biology and Medicine",
  volume       = "183",
  pages        = "109234",
  year         = "2024",
  note         = "ISSN 0010-4825",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2024/ESM24"
}
@Article{BDGRPFCASM24,
  author       = "Bugnon, L. A. and Di Persia, L. and Gerard, M. and Raad, J. and Prochetto, S. and Fenoy, E. and Chorostecki, U. and Ariel, F. and Stegmayer, G. and Milone, D. H.",
  title        = "sincFold: end-to-end learning of short- and long-range interactions in RNA secondary structure",
  journal      = "Briefings in Bioinformatics",
  number       = "4",
  volume       = "25",
  year         = "2024",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2024/BDGRPFCASM24"
}
@Article{BFERSM23,
  author       = "Bugnon, L. A. and Fenoy, E. and Edera, A. and Raad, J. and Stegmayer, G. and Milone, D. H.",
  title        = "Transfer learning: The key to functionally annotate the protein universe",
  journal      = "Patterns",
  year         = "2023",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2023/BFERSM23"
}
@Article{EMS22,
  author       = "Edera, A. and Milone, D. H. and Stegmayer, G.",
  title        = "Anc2vec: embedding gene ontology terms by preserving ancestors relationships",
  journal      = "Briefings in Bioinformatics",
  month        = "feb",
  year         = "2022",
  note         = "bbac003",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2022/EMS22"
}
@Article{DLAMS22,
  author       = "Di Persia, L. and López, T. and Arce, A. A. and Milone, D. H. and Stegmayer, G.",
  title        = "exp2GO: improving prediction of functions in the Gene Ontology with expression data",
  journal      = "IEEE/ACM Transactions on Computational Biology and Bioinformatics",
  pages        = "1--10",
  year         = "2022",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2022/DLAMS22"
}
@Article{MSMSM22,
  author       = "Merino, G. and Saidi, R. and Milone, D. H. and Stegmayer, G. and Martín, M.",
  title        = "Hierarchical deep learning for predicting GO annotations by integrating protein knowledge",
  journal      = "Bioinformatics",
  month        = "aug",
  year         = "2022",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2022/MSMSM22"
}
@Article{BEPGRFRCGADMS22,
  author       = "Bugnon, L. A. and Edera, A. and Prochetto, S. and Gerard, M. and Raad, J. and Fenoy, E. and Rubiolo, M. and Chorostecki, U. and Gabaldon, G. and Ariel, F. and Di Persia, L. and Milone, D. H. and Stegmayer, G.",
  title        = "Secondary structure prediction of long noncoding RNA: review and experimental comparison of existing approaches",
  journal      = "Briefing in Bioinformatics",
  year         = "2022",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2022/BEPGRFRCGADMS22"
}
@Article{FES22,
  author       = "Fenoy, E. and Edera, A. and Stegmayer, G.",
  title        = "Transfer learning in proteins: evaluating novel protein learned representations for bioinformatics tasks",
  journal      = "Briefings in Bioinformatics",
  number       = "4",
  volume       = "23",
  year         = "2022",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2022/FES22"
}
@Article{BRMYAMS21,
  author       = "Bugnon, L. A. and Raad, J. and Merino, G. and Yones, C. and Ariel, F. and Milone, D. H. and Stegmayer, G.",
  title        = "Deep Learning for the discovery of new pre-miRNAs: helping the fight against COVID-19",
  journal      = "Machine Learning with Applications",
  volume       = "6",
  year         = "2021",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2021/BRMYAMS21"
}
@Article{YRBMS21,
  author       = "Yones, C. and Raad, J. and Bugnon, L. A. and Milone, D. H. and Stegmayer, G.",
  title        = "High precision in microRNA prediction: a novel genome-wide approach with convolutional deep residual networks",
  journal      = "Computers in Biology and Medicine",
  volume       = "134",
  year         = "2021",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2021/YRBMS21"
}
@Article{RBMS21,
  author       = "Raad, J. and Bugnon, L. A. and Milone, D. H. and Stegmayer, G.",
  title        = "miRe2e: a full end-to-end deep model based on transformers for prediction of pre-miRNAs",
  journal      = "Bioinformatics",
  year         = "2021",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2021/RBMS21"
}
@Article{RSM20,
  author       = "Raad, J. and Stegmayer, G. and Milone, D. H.",
  title        = "Complexity measures of the mature miRNA for improving pre-miRNAs prediction",
  journal      = "Bioinformatics",
  year         = "2020",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2020/RSM20"
}
@Article{BYRGRMPDMS20,
  author       = "Bugnon, L. A. and Yones, C. and Raad, J. and Gerard, M. and Rubiolo, M. and Merino, G. and Pividori, M. and Di Persia, L. and Milone, D. H. and Stegmayer, G.",
  title        = "DL4papers: a deep learning approach for the automatic interpretation of scientific articles",
  journal      = "Oxford Bioinformatics",
  year         = "2020",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2020/BYRGRMPDMS20"
}
@Article{BYMS20,
  author       = "Bugnon, L. A. and Yones, C. and Milone, D. H. and Stegmayer, G.",
  title        = "Genome-wide discovery of pre-miRNAs: comparison of recent approaches based on machine learning",
  journal      = "Oxford Briefings in Bioinformatics",
  year         = "2020",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2020/BYMS20"
}
@Article{YMKSM20,
  author       = "Yones, C. and Macchiaroli, N. and Kamenetzky, L. and Stegmayer, G. and Milone, D. H.",
  title        = "HextractoR: an R package for automatic extraction of hairpins from genome-wide data",
  journal      = "bioRxiv",
  year         = "2020",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2020/YMKSM20"
}
@Article{MRBYKCAMS20,
  author       = "Merino, G. and Raad, J. and Bugnon, L. A. and Yones, C. and Kamenetzky, L. and Claus, J. and Ariel, F. and Milone, D. H. and Stegmayer, G.",
  title        = "Novel SARS-CoV-2 encoded small RNAs in the passage to humans",
  journal      = "Bioinformatics",
  month        = "11",
  year         = "2020",
  note         = "btaa1002",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2020/MRBYKCAMS20"
}
@Article{RLYASMM19,
  author       = "Ré, Delfina A. and Lang, Patricia L.M. and Yones, C. and Arce, Agustín and Stegmayer, G. and Milone, D. H. and Manavella, Pablo A.",
  title        = "Alternative usage of miRNA-biogenesis co-factors in plants at low temperatures",
  journal      = "Development",
  year         = "2019",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2019/RLYASMM19"
}
@InProceedings{DMS19,
  author       = "Di Persia, L. and Milone, D. H. and Stegmayer, G.",
  title        = "Annotation pipeline for inferring gene functions integrating GO annotations and expression data",
  booktitle    = "A2B2C 10th Meeting",
  year         = "2019",
  address      = "Mendoza, Argentina",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2019/DMS19"
}
@InProceedings{BYRGRMPDMS19,
  author       = "Bugnon, L. A. and Yones, C. and Raad, J. and Gerard, M. and Rubiolo, M. and Merino, G. and Pividori, M. and Di Persia, L. and Milone, D. H. and Stegmayer, G.",
  title        = "Deep learning for reading and interpreting biomedical papers",
  booktitle    = "A2B2C 10th Meeting",
  year         = "2019",
  address      = "Mendoza, Argentina",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2019/BYRGRMPDMS19"
}
@InProceedings{BYMS19a,
  author       = "Bugnon, L. A. and Yones, C. and Milone, D. H. and Stegmayer, G.",
  title        = "Deep neural architectures for highly imbalanced data in bioinformatics",
  booktitle    = "Argentine Symposium on Data Science and Big Data, AGRANDA 2019, 48º JAIIO",
  year         = "2019",
  address      = "Universidad Nacional de Salta. Salta, Argentina",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2019/BYMS19a"
}
@Article{BYMS19,
  author       = "Bugnon, L. A. and Yones, C. and Milone, D. H. and Stegmayer, G.",
  title        = "Deep neural architectures for highly imbalanced data in bioinformatics",
  journal      = "IEEE Transactions on Neural Networks and Learning Systems",
  year         = "2019",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2019/BYMS19"
}
@Article{BYRMS19,
  author       = "Bugnon, L. A. and Yones, C. and Raad, J. and Milone, D. H. and Stegmayer, G.",
  title        = "Genome-wide hairpins datasets of animals and plants for novel miRNA prediction",
  journal      = "Data in Brief (in press)",
  year         = "2019",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2019/BYRMS19"
}
@InProceedings{RMS19,
  author       = "Raad, J. and Milone, D. H. and Stegmayer, G.",
  title        = "Improving pre-miRNA prediction with complexity measures of the mature and deep learning",
  booktitle    = "A2B2C 10th Meeting",
  year         = "2019",
  address      = "Mendoza, Argentina",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2019/RMS19"
}
@InProceedings{GSM19,
  author       = "Gerard, M. and Stegmayer, G. and Milone, D. H.",
  title        = "Metabolic pathways synthesis based on ant colony optimization",
  booktitle    = "XX Simposio Argentino de Inteligencia Artificial (ASAI). 48  Jornadas Argentinas de Informática (JAIIO) - UNSa",
  year         = "2019",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2019/GSM19"
}
@InProceedings{YBRMS19,
  author       = "Yones, C. and Bugnon, L. A. and Raad, J. and Milone, D. H. and Stegmayer, G.",
  title        = "MicroRNA prediction from genome-wide data with deep learning: a novel approach based on convolutional residual networks",
  booktitle    = "A2B2C 10th Meeting",
  year         = "2019",
  address      = "Mendoza, Argentina",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2019/YBRMS19"
}
@Article{PCHCSM18,
  author       = "Pividori, M. and Cernadas, A. and Haro, L. A. and Carrari, F. and Stegmayer, G. and Milone, D. H.",
  title        = "Clustermatch: discovering hidden relations in highly diverse kinds of qualitative and quantitative data without standardization",
  journal      = "Bioinformatics",
  year         = "2018",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2018/PCHCSM18"
}
@Article{RMS18,
  author       = "Rubiolo, M. and Milone, D. H. and Stegmayer, G.",
  title        = "Extreme learning machines for reverse engineering of gene regulatory networks from expression time series",
  journal      = "Bioinformatics",
  number       = "7",
  volume       = "34",
  pages        = "1253--1260",
  month        = "Apr",
  year         = "2018",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2018/RMS18"
}
@Article{LBMGS18,
  author       = "Leale, G. and Bayá, A and Milone, D. H. and Granitto, P. and Stegmayer, G.",
  title        = "Inferring unknown biological function byintegration of GO annotations and geneexpression data.",
  journal      = "IEEE/ACM Trans. on Comp. Biology and Bioinformatics",
  number       = "1",
  volume       = "15",
  pages        = "168--180",
  year         = "2018",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2018/LBMGS18"
}
@Article{GSM18,
  author       = "Gerard, M. and Stegmayer, G. and Milone, D. H.",
  title        = "Metabolic pathways synthesis based on ant colony optimization",
  journal      = "Scientific Reports",
  number       = "1",
  volume       = "8",
  pages        = "16398",
  year         = "2018",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2018/GSM18"
}
@Article{SDRGPYBRRM18,
  author       = "Stegmayer, G. and Di Persia, L. and Rubiolo, M. and Gerard, M. and Pividori, M. and Yones, C. and Bugnon, L. A. and Rodriguez, T. and Raad, J. and Milone, D. H.",
  title        = "Predicting novel microRNA: a comprehensive comparison of machine learning approaches",
  journal      = "Briefings in Bioinformatics",
  year         = "2018",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2018/SDRGPYBRRM18"
}
@InBook{SYKMM17,
  author       = "Stegmayer, G. and Yones, C. and Kamenetzky, L. and Macchiaroli, N. and Milone, D. H.",
  title        = "Computational prediction of novel miRNAs from genome-wide data",
  chapter      = "2",
  pages        = "29--37",
  year         = "2017",
  publisher    = "Springer New York",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2017/SYKMM17"
}
@InProceedings{RDMS17,
  author       = "Rodriguez, T. and Di Persia, L. and Milone, D. H. and Stegmayer, G.",
  title        = "Extreme learning machine prediction under high class imbalance in bioinformatics",
  booktitle    = "Proceedings de XLIII CLEI - 46 JAIIO",
  series       = "Simposio latinoamericano de investigación de operaciones e inteligencia artificial (SLIOIA)",
  year         = "2017",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2017/RDMS17"
}
@Article{YSM17,
  author       = "Yones, C. and Stegmayer, G. and Milone, D. H.",
  title        = "Genome-wide pre-miRNA discovery from few labeled examples",
  journal      = "Bioinformatics",
  year         = "2017",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2017/YSM17"
}
@Article{SYKM17,
  author       = "Stegmayer, G. and Yones, C. and Kamenetzky, L. and Milone, D. H.",
  title        = "High class-imbalance in pre-miRNA prediction: a novel approach based on deepSOM",
  journal      = "IEEE/ACM Trans. on Comp. Biology and Bioinformatics",
  number       = "6",
  pages        = "1316--1326",
  year         = "2017",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2017/SYKM17"
}
@InProceedings{GSM17,
  author       = "Gerard, M. and Stegmayer, G. and Milone, D. H.",
  title        = "Metabolic pathways design guided by bioinspired metaheuristics",
  booktitle    = "8vo. Congreso Argentino de Bioinformática y Biología Computacional (8CAB2C) - 2017",
  year         = "2017",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2017/GSM17"
}
@Article{PMLCAMSKCR17a,
  author       = "Perez, M. and Macchiaroli, N. and Lichtenstein, G. and Conti, G. and Asurmendi, S. and Milone, D. H. and Stegmayer, G. and Kamenetzky, L. and Cucher , M and Rosenzvit, M. C.",
  title        = "microRNA analysis of Taenia crassiceps cysticerci under praziquantel treatment and genome-wide identification of {Taenia} solium {miRNAs}",
  journal      = "Int. J. for Parasitology",
  number       = "10--11",
  volume       = "47",
  pages        = "643--653",
  year         = "2017",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2017/PMLCAMSKCR17a"
}
@InProceedings{PSCCCM16a,
  author       = "Pividori, M. and Stegmayer, G. and Cernadas, A. and Conte, M. and Carrari, F. and Milone, D. H.",
  title        = "A novel approach for highly-diverse multi-omics data fusion applied to tomato germplasm selection",
  booktitle    = "4th ISCB-LA Bioinformatics Conference",
  year         = "2016",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2016/PSCCCM16a"
}
@Article{SPM16,
  author       = "Stegmayer, G. and Pividori, M. and Milone, D. H.",
  title        = "A very simple and fast way to access and validate algorithms in reproducible research.",
  journal      = "Briefings in Bioinformatics.",
  number       = "1",
  volume       = "17",
  pages        = "180--183",
  year         = "2016",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2016/SPM16"
}
@InProceedings{YSKM16,
  author       = "Yones, C. and Stegmayer, G. and Kamenetzky, L. and Milone, D. H.",
  title        = "Automatic extraction of hairpin sequences from genome-wide data",
  booktitle    = "4th ISCB-LA Bioinformatics Conference",
  month        = "nov",
  year         = "2016",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2016/YSKM16"
}
@InProceedings{GSM16b,
  author       = "Gerard, M. and Stegmayer, G. and Milone, D. H.",
  title        = "Bio-inspired metaheuristics for automatic synthesis of novel metabolic pathways",
  booktitle    = "4th ISCB-LA Bioinformatics Conference",
  pages        = "1--2",
  year         = "2016",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2016/GSM16b"
}
@InProceedings{SM16,
  author       = "Stegmayer, G. and Milone, D. H.",
  title        = "Discovery of novel pre-miRNAs: unsupervised versus supervised machine learning",
  booktitle    = "4th ISCB-LA Bioinformatics Conference",
  year         = "2016",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2016/SM16"
}
@Article{PSM16,
  author       = "Pividori, M. and Stegmayer, G. and Milone, D. H.",
  title        = "Diversity control for improving the analysis of consensus clustering",
  journal      = "Information Sciences",
  year         = "2016",
  note         = "In press",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2016/PSM16"
}
@Article{GSM16,
  author       = "Gerard, M. and Stegmayer, G. and Milone, D. H.",
  title        = "Evolutionary algorithm for metabolic pathways synthesis",
  journal      = "BioSystems",
  volume       = "144",
  pages        = "55--67",
  year         = "2016",
  note         = "InPress",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2016/GSM16"
}
@InProceedings{GSM16a,
  author       = "Gerard, M. and Stegmayer, G. and Milone, D. H.",
  title        = "Evolutionary algorithm for metabolic pathways synthesis",
  booktitle    = "XVII Simposio Argentino de Inteligencia Artificial - 45 Jornadas Argentinas de Informática",
  pages        = "136--138",
  year         = "2016",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2016/GSM16a"
}
@InProceedings{RMS16a,
  author       = "Rubiolo, M. and Milone, D. H. and Stegmayer, G.",
  title        = "Extreme learning machines for discovering gene regulatory networks from temporal profiles of expression",
  booktitle    = "4th ISCB-LA Bioinformatics Conference",
  pages        = "1--2",
  year         = "2016",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2016/RMS16a"
}
@Article{KSMMYM16,
  author       = "Kamenetzky, L. and Stegmayer, G. and Maldonado, L. and Macchiaroli, N. and Yones, C. and Milone, D. H.",
  title        = "MicroRNA discovery in the human parasite Echinococcus multilocularis from genome-wide data",
  journal      = "Genomics",
  number       = "6",
  volume       = "107",
  pages        = "274--280",
  year         = "2016",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2016/KSMMYM16"
}
@InProceedings{RMS16,
  author       = "Rubiolo, M. and Milone, D. H. and Stegmayer, G.",
  title        = "Mining gene regulatory networks by neural modeling of expression timeseries",
  booktitle    = "XVII Simposio Argentino de Inteligencia Artificial - 45 Jornadas Argentinas de Informática",
  pages        = "128--130",
  year         = "2016",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2016/RMS16"
}
@Article{CSM16,
  author       = "Campo, D. N. and Stegmayer, G. and Milone, D. H.",
  title        = "New index for clustering validation with overlapped clusters",
  journal      = "Expert Systems With Applications",
  volume       = "64",
  pages        = "549--556",
  year         = "2016",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2016/CSM16"
}
@InProceedings{DLSM16,
  author       = "Di Persia, L. and Leale, G. and Stegmayer, G. and Milone, D. H.",
  title        = "Non-negative matrix factorization for prediction of gene annotations",
  booktitle    = "4th ISCB-LA Bioinformatics Conference",
  year         = "2016",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2016/DLSM16"
}
@InProceedings{SYKMPRM16,
  author       = "Stegmayer, G. and Yones, C. and Kamenetzky, L. and Macchiaroli, N. and Perez, M. and Rosenzvit, M. C. and Milone, D. H.",
  title        = "Novel microRNA discovery from genome-wide data: a computational pipeline with unsupervised machine learning",
  booktitle    = "4th ISCB-LA Bioinformatics Conference",
  year         = "2016",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2016/SYKMPRM16"
}
@InProceedings{PSM15,
  author       = "Pividori, M. and Stegmayer, G. and Milone, D. H.",
  title        = "Cluster Ensembles for Big Data Mining Problems",
  booktitle    = "Argentine Symposium on Big Data, 44 JAIIO (Argentine Conference on Informatics)",
  year         = "2015",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2015/PSM15"
}
@InProceedings{RMS15,
  author       = "Rubiolo, M. and Milone, D. H. and Stegmayer, G.",
  title        = "Discovering network relations in big time series with application to bioinformatics",
  booktitle    = "Primer Simposio Argentino de Grandes Datos AGRANDA 2015, 44 JAIIO Jornadas Argentinas de Informática",
  pages        = "41--42",
  year         = "2015",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2015/RMS15"
}
@Article{GSM15,
  author       = "Gerard, M. and Stegmayer, G. and Milone, D. H.",
  title        = "EvoMS: an evolutionary tool to find de novo metabolic pathways.",
  journal      = "BioSystems",
  number       = "134",
  pages        = "43--47",
  year         = "2015",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2015/GSM15"
}
@Article{LZPSBCBCRPZFMAVC15,
  author       = "López, M. G. and Zanor, M.I. and Pratta, G.R. and Stegmayer, G. and Boggio, S.B. and Conte, M. and Bermudez, L. and Coluccio Leskow, C. and Rodríguez, G.R. and Picardi, L.A. and Zorzoli, R. and Fernie, A. and Milone, D. H. and Asís, R. and Valle, E.M. and Carrari, F.",
  title        = "Metabolic analyses of interspecific tomato recombinant inbred lines for fruit quality improvement",
  journal      = "Metabolomics",
  number       = "5",
  volume       = "11",
  pages        = "1416--1431",
  month        = "oct",
  year         = "2015",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2015/LZPSBCBCRPZFMAVC15"
}
@Article{RSM15,
  author       = "Rubiolo, M. and Stegmayer, G. and Milone, D. H.",
  title        = "Mining gene regulatory networks by neural modeling of expression time-series",
  journal      = "IEEE IEEE/ACM Transactions on Computational Biology and Bioinformatics",
  number       = "6",
  volume       = "12",
  pages        = "1365--1373",
  year         = "2015",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2015/RSM15"
}
@Article{YSKM15a,
  author       = "Yones, C. and Stegmayer, G. and Kamenetzky, L. and Milone, D. H.",
  title        = "miRNAfe: a comprehensive tool for feature extraction in microRNA prediction",
  journal      = "BioSystems",
  volume       = "138",
  pages        = "1--5",
  month        = "oct",
  year         = "2015",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2015/YSKM15a"
}
@InProceedings{YSKM15,
  author       = "Yones, C. and Stegmayer, G. and Kamenetzky, L. and Milone, D. H.",
  title        = "miRNAfe: a tool for feature extraction in pre-miRNA prediction",
  booktitle    = "VI Argentinian Conference on Bioinformatics and Computational Biology",
  month        = "oct",
  year         = "2015",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2015/YSKM15"
}
@InProceedings{YSM15,
  author       = "Yones, C. and Stegmayer, G. and Milone, D. H.",
  title        = "miRNAss: a semi-supervised approach for microRNA prediction",
  booktitle    = "VI Argentinian Conference on Bioinformatics and Computational Biology",
  month        = "oct",
  year         = "2015",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2015/YSM15"
}
@Article{PSM14,
  author       = "Pividori, M. and Stegmayer, G. and Milone, D. H.",
  title        = "A Method to Improve the Analysis of Cluster Ensembles",
  journal      = "Revista Iberoamericana de Inteligencia Artificial",
  number       = "53",
  volume       = "17",
  pages        = "46--56",
  year         = "2014",
  note         = "ISSN: 1137-3601",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2014/PSM14"
}
@Article{CSM14,
  author       = "Campo, D. N. and Stegmayer, G. and Milone, D. H.",
  title        = "Análisis de estabilidad en clusters solapados",
  journal      = "Revista Iberoamericana de Inteligencia Artificial",
  number       = "53",
  volume       = "17",
  pages        = "79--89",
  year         = "2014",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2014/CSM14"
}
@Article{MSLKC14,
  author       = "Milone, D. H. and Stegmayer, G. and López, M. G. and Kamenetzky, L. and Carrari, F.",
  title        = "Improving clustering with metabolic pathway data",
  journal      = "BMC Bioinformatics",
  number       = "101",
  volume       = "15",
  year         = "2014",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2014/MSLKC14"
}
@InProceedings{LMBGS13,
  author       = "Leale, G. and Milone, D. H. and Bayá, A and Granitto, P. and Stegmayer, G.",
  title        = "A novel clustering approach for biological data using a new distance based on Gene Ontology",
  booktitle    = "Argentine Symposium on Artificial Intelligence (ASAI 2013) - 42º JAIIO",
  year         = "2013",
  note         = "in press.",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2013/LMBGS13"
}
@InProceedings{PSM13,
  author       = "Pividori, M. and Stegmayer, G. and Milone, D. H.",
  title        = "A Novel Method to Control the Diversity in Cluster Ensembles",
  booktitle    = "Argentine Symposium on Artificial Intelligence (ASAI 2013) - 42º JAIIO",
  pages        = "121--132",
  year         = "2013",
  note         = "ISBN: 1850-2784",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2013/PSM13"
}
@Article{GSM13,
  author       = "Gerard, M. and Stegmayer, G. and Milone, D. H.",
  title        = "An evolutionary approach for searching metabolic pathways",
  journal      = "Computers in Biology and Medicine",
  number       = "11",
  volume       = "43",
  pages        = "1704--1712",
  month        = "nov",
  year         = "2013",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2013/GSM13"
}
@Article{SMGB13,
  author       = "Stegmayer, G. and Milone, D. H. and Garran, S. and Burdyn, L.",
  title        = "Automatic recognition of quarantine citrus diseases",
  journal      = "Expert Systems With Applications",
  volume       = "40",
  pages        = "3512--3517",
  year         = "2013",
  note         = "Lugar: Amsterdam",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2013/SMGB13"
}
@Article{MSKLC13,
  author       = "Milone, D. H. and Stegmayer, G. and Kamenetzky, L. and López, M. G. and Carrari, F.",
  title        = "Clustering biological data with SOMs: on topology preservation in non-linear dimensional reduction",
  journal      = "Expert Systems With Applications",
  volume       = "40",
  pages        = "3841--3845",
  year         = "2013",
  note         = "Lugar: Amsterdam",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2013/MSKLC13"
}
@Article{RSM13,
  author       = "Rubiolo, M. and Stegmayer, G. and Milone, D. H.",
  title        = "Compressing arrays of classifiers using Volterra-Neural Network: application to face recognition",
  journal      = "Neural Computing & Applications",
  number       = "6",
  volume       = "23",
  pages        = "1687--1701",
  year         = "2013",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2013/RSM13"
}
@InProceedings{PSCM13,
  author       = "Pividori, M. and Stegmayer, G. and Carrari, F. and Milone, D. H.",
  title        = "Consensus clustering from heterogeneous measures of S. Lycopersicum",
  booktitle    = "4to. Congreso Argentino de Bioinformática y Biología Computacional (4CAB2C)",
  year         = "2013",
  note         = "in press.",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2013/PSCM13"
}
@InProceedings{LMBGS13a,
  author       = "Leale, G. and Milone, D. H. and Bayá, A and Granitto, P. and Stegmayer, G.",
  title        = "New approach for biological clustering based on Gene Ontology",
  booktitle    = "4to. Congreso Argentino de Bioinformática y Biología Computacional (4CAB2C)",
  year         = "2013",
  note         = "in press.",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2013/LMBGS13a"
}
@InProceedings{CSM13,
  author       = "Campo, D. N. and Stegmayer, G. and Milone, D. H.",
  title        = "Nuevo índice para el análisis de estabilidad en clusters solapados",
  booktitle    = "Argentine Symposium on Artificial Intelligence (ASAI 2013) - 42º JAIIO",
  pages        = "24--35",
  year         = "2013",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2013/CSM13"
}
@Article{SMKLC12,
  author       = "Stegmayer, G. and Milone, D. H. and Kamenetzky, L. and López, M. G. and Carrari, F.",
  title        = "A biologically-inspired validity measure for comparison of clustering  methods over metabolic datasets",
  journal      = "IEEE ACM Transactions in Computational Biology and Bioinformatics",
  number       = "3",
  volume       = "9",
  pages        = "706--716",
  month        = "may",
  year         = "2012",
  keywords     = "Clustering , biological assessment , metabolic pathways. , validation measure ",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2012/SMKLC12"
}
@Article{GSM12,
  author       = "Gerard, M. and Stegmayer, G. and Milone, D. H.",
  title        = "Algoritmo evolutivo para la búsqueda de vías metabólicas",
  journal      = "Inteligencia Artificial",
  volume       = "15",
  pages        = "1--12",
  year         = "2012",
  note         = "Ed. AEPIA. Lugar: Madrid",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2012/GSM12"
}
@Article{SGM12,
  author       = "Stegmayer, G. and Gerard, M. and Milone, D. H.",
  title        = "Data mining over biological datasets: an integrated approach based on computational intelligence",
  journal      = "IEEE Computational Intelligence Magazine",
  number       = "4",
  volume       = "7",
  pages        = "22--34",
  year         = "2012",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2012/SGM12"
}
@Article{RCSCG12,
  author       = "Rubiolo, M. and Caliusco, M. L. and Stegmayer, G. and Coronel, M. and Gareli Fabrizi, M.",
  title        = "Knowledge Discovery through Ontology Matching: An Approach based on an Artificial Neural Network Model",
  journal      = "Information Sciences",
  volume       = "194",
  pages        = "107--119",
  year         = "2012",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2012/RCSCG12"
}
@InProceedings{GSM12a,
  author       = "Gerard, M. and Stegmayer, G. and Milone, D. H.",
  title        = "Metabolic pathfinding based on genetic algorithms",
  booktitle    = "3er. Congreso Argentino de Bioinformática y Biología Computacional (3CAB2C) - 2012",
  year         = "2012",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2012/GSM12a"
}
@Article{MSKLGLC10,
  author       = "Milone, D. H. and Stegmayer, G. and Kamenetzky, L. and López, M. G. and Giovannoni, J. and Lee, Je Min and Carrari, F.",
  title        = "*omeSOM: a software for integration, clustering and visualization of transcriptional and metabolite data mined from interspecific crosses of crop plants",
  journal      = "BMC Bioinformatics",
  volume       = "4",
  pages        = "438--448",
  year         = "2010",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2010/MSKLGLC10"
}
@InBook{MSGKLC10,
  author       = "Milone, D. H. and Stegmayer, G. and Gerard, M. and Kamenetzky, L. and López, M. G. and Carrari, F.",
  title        = "Analysis and integration of biological data: a data mining approach using neural networks",
  booktitle    = "Knowledge Discovery Practices and Emerging Applications of Data Mining: Trends and New Domains",
  pages        = "287--314",
  year         = "2010",
  editor       = "A. V. Senthil Kumar",
  publisher    = "IGI Global",
  note         = "ISBN-13: 9781609600679, ISBN 1-60960-067-3, DOI: 10.4018/978-1-60960-067-9.ch014",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2010/MSGKLC10"
}
@InProceedings{GSM10,
  author       = "Gerard, M. and Stegmayer, G. and Milone, D. H.",
  title        = "Búsqueda evolutiva de vías metabólicas",
  booktitle    = "XI Argentine Symposium on Artificial Intelligence ({ASAI} 2010)",
  month        = "aug",
  year         = "2010",
  address      = "Buenos Aires, Argentina",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2010/GSM10"
}
@InProceedings{RSM10,
  author       = "Rubiolo, M. and Stegmayer, G. and Milone, D. H.",
  title        = "Compressing a Neural Network Classifier using a Volterra-Neural Network model",
  booktitle    = "IEEE International Joint Conference on Neural Networks ({IJCNN})",
  pages        = "1--7",
  month        = "Jul",
  year         = "2010",
  address      = "Barcelona, Spain",
  note         = "DOI 10.1109/IJCNN.2010.5596698",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2010/RSM10"
}
@InProceedings{KLSMGFC10,
  author       = "Kamenetzky, L. and López, M. G. and Stegmayer, G. and Milone, D. H. and Giovannoni, J. and Fernie, A. and Carrari, F.",
  title        = "Metabolic pathway reconstruction by a neural clustering",
  booktitle    = "1er Congreso Argentino de Bioinformática y Biología Computacional",
  month        = "may",
  year         = "2010",
  address      = "Buenos Aires, Argentina",
  note         = "In press.",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2010/KLSMGFC10"
}
@Article{RSC10,
  author       = "Rubiolo, M. and Stegmayer, G. and Chiotti, O.",
  title        = "Neural Networks and Wireless Communications Modeling",
  journal      = "IEEE Latin America Transactions",
  volume       = "8",
  pages        = "486--492",
  year         = "2010",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2010/RSC10"
}
@MastersThesis{SMS10,
  author       = "Scarel, G. M. and Martínez, C. E. and Stegmayer, G.",
  title        = "Sistema de reconocimiento facial (Undergraduate project)",
  school       = "Facultad de Ingeniería y Ciencias Hídricas - Universidad Nacional del Litoral",
  year         = "2010",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2010/SMS10"
}
@Article{CMMS09,
  author       = "Capello, D. and Martínez, C. E. and Milone, D. H. and Stegmayer, G.",
  title        = "Array of Multilayer Perceptrons with No-class Resampling Training for Face Recognition",
  journal      = "Revista Iberoamericana de Inteligencia Artificial",
  number       = "44",
  volume       = "13",
  pages        = "5--13",
  year         = "2009",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2009/CMMS09"
}
@InProceedings{CMMS09a,
  author       = "Capello, D. and Martínez, C. E. and Milone, D. H. and Stegmayer, G.",
  title        = "Array of Multilayer Perceptrons with No-class Resampling Training for Face Recognition",
  booktitle    = "X Argentine Symposium on Artificial Intelligence ({ASAI 2009})",
  month        = "August",
  year         = "2009",
  address      = "Mar del Plata, Argentina",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2009/CMMS09a"
}
@InProceedings{MSB09,
  author       = "Milone, D. H. and Stegmayer, G. and Beber, D.",
  title        = "Artificial Life Contest: a tool for informal teaching of artificial intelligence",
  booktitle    = "International Conference on Computer Supported Education ({CSEDU} 2009)",
  pages        = "119--124",
  month        = "March",
  year         = "2009",
  address      = "Lisboa, Portugal",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2009/MSB09"
}
@InProceedings{RCSGC09,
  author       = "Rubiolo, M. and Caliusco, M. L. and Stegmayer, G. and Gareli Fabrizi, M. and Coronel, M.",
  title        = "Knowledge Source Discovery: An experience using Ontologies, WordNet and Artificial Neural Networks",
  booktitle    = "13th International Conference on Knowledge-Based and Intelligent Information & Engineering Systems",
  year         = "2009",
  address      = "Santiago de Chile",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2009/RCSGC09"
}
@InProceedings{MSGKLC09a,
  author       = "Milone, D. H. and Stegmayer, G. and Gerard, M. and Kamenetzky, L. and López, M. G. and Carrari, F.",
  title        = "Métodos de agrupamiento no supervisado para la integración de datos genómicos y metabólicos de múltiples líneas de introgresión",
  booktitle    = "X Argentine Symposium on Artificial Intelligence ({ASAI 2009})",
  pages        = "71--82",
  month        = "August",
  year         = "2009",
  address      = "Mar del Plata, Argentina",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2009/MSGKLC09a"
}
@Article{MSGKLC09,
  author       = "Milone, D. H. and Stegmayer, G. and Gerard, M. and Kamenetzky, L. and López, M. G. and Carrari, F.",
  title        = "Métodos de agrupamiento no supervisado para la integración de datos genómicos y metabólicos de múltiples líneas de introgresión",
  journal      = "Revista Iberoamericana de Inteligencia Artificial",
  number       = "44",
  volume       = "13",
  pages        = "56--66",
  year         = "2009",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2009/MSGKLC09"
}
@InProceedings{SMKLC09,
  author       = "Stegmayer, G. and Milone, D. H. and Kamenetzky, L. and López, M. G. and Carrari, F.",
  title        = "Neural Network Model for Integration and Visualization of Introgressed Genome and Metabolite Data",
  booktitle    = "IEEE International Joint Conference on Neural Networks ({IJCNN})",
  pages        = "2983--2989",
  month        = "June",
  year         = "2009",
  address      = "Atlanta, USA",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2009/SMKLC09"
}
@PhdThesis{Ste05,
  author       = "Stegmayer, G.",
  title        = "Nonlinear RF/Microwave device and system modeling using neural networks",
  school       = "Politecnico di Torino",
  month        = "dec",
  year         = "2005",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2005/Ste05"
}