@Article{YMKSM20,
  author       = "Yones, C. and Macchiaroli, N. and Kamenetzky, L. and Stegmayer, G. and Milone, D. H.",
  title        = "HextractoR: an R package for automatic extraction of hairpins from genome-wide data",
  journal      = "bioRxiv",
  year         = "2020",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2020/YMKSM20"
}
@Article{MRBYKCAMS20,
  author       = "Merino, G. and Raad, J. and Bugnon, L. A. and Yones, C. and Kamenetzky, L. and Claus, J. and Ariel, F. and Milone, D. H. and Stegmayer, G.",
  title        = "Novel SARS-CoV-2 encoded small RNAs in the passage to humans",
  journal      = "Bioinformatics",
  month        = "11",
  year         = "2020",
  note         = "btaa1002",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2020/MRBYKCAMS20"
}
@Article{MCKYBBOR18,
  author       = "Macchiaroli, N. and Cucher , M and Kamenetzky, L. and Yones, C. and Bugnon, L. A. and Berriman, M. and Olson, P. and Rosenzvit, M. C.",
  title        = "Identification and expression profiling of microRNAs in Hymenolepis.",
  journal      = "International Journal for Parasitology",
  year         = "2018",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2018/MCKYBBOR18"
}
@InBook{SYKMM17,
  author       = "Stegmayer, G. and Yones, C. and Kamenetzky, L. and Macchiaroli, N. and Milone, D. H.",
  title        = "Computational prediction of novel miRNAs from genome-wide data",
  chapter      = "2",
  pages        = "29--37",
  year         = "2017",
  publisher    = "Springer New York",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2017/SYKMM17"
}
@Article{SYKM17,
  author       = "Stegmayer, G. and Yones, C. and Kamenetzky, L. and Milone, D. H.",
  title        = "High class-imbalance in pre-miRNA prediction: a novel approach based on deepSOM",
  journal      = "IEEE/ACM Trans. on Comp. Biology and Bioinformatics",
  number       = "6",
  pages        = "1316--1326",
  year         = "2017",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2017/SYKM17"
}
@Article{PMLCAMSKCR17a,
  author       = "Perez, M. and Macchiaroli, N. and Lichtenstein, G. and Conti, G. and Asurmendi, S. and Milone, D. H. and Stegmayer, G. and Kamenetzky, L. and Cucher , M and Rosenzvit, M. C.",
  title        = "microRNA analysis of Taenia crassiceps cysticerci under praziquantel treatment and genome-wide identification of {Taenia} solium {miRNAs}",
  journal      = "Int. J. for Parasitology",
  number       = "10--11",
  volume       = "47",
  pages        = "643--653",
  year         = "2017",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2017/PMLCAMSKCR17a"
}
@InProceedings{YSKM16,
  author       = "Yones, C. and Stegmayer, G. and Kamenetzky, L. and Milone, D. H.",
  title        = "Automatic extraction of hairpin sequences from genome-wide data",
  booktitle    = "4th ISCB-LA Bioinformatics Conference",
  month        = "nov",
  year         = "2016",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2016/YSKM16"
}
@Article{KSMMYM16,
  author       = "Kamenetzky, L. and Stegmayer, G. and Maldonado, L. and Macchiaroli, N. and Yones, C. and Milone, D. H.",
  title        = "MicroRNA discovery in the human parasite Echinococcus multilocularis from genome-wide data",
  journal      = "Genomics",
  number       = "6",
  volume       = "107",
  pages        = "274--280",
  year         = "2016",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2016/KSMMYM16"
}
@InProceedings{SYKMPRM16,
  author       = "Stegmayer, G. and Yones, C. and Kamenetzky, L. and Macchiaroli, N. and Perez, M. and Rosenzvit, M. C. and Milone, D. H.",
  title        = "Novel microRNA discovery from genome-wide data: a computational pipeline with unsupervised machine learning",
  booktitle    = "4th ISCB-LA Bioinformatics Conference",
  year         = "2016",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2016/SYKMPRM16"
}
@Article{YSKM15a,
  author       = "Yones, C. and Stegmayer, G. and Kamenetzky, L. and Milone, D. H.",
  title        = "miRNAfe: a comprehensive tool for feature extraction in microRNA prediction",
  journal      = "BioSystems",
  volume       = "138",
  pages        = "1--5",
  month        = "oct",
  year         = "2015",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2015/YSKM15a"
}
@InProceedings{YSKM15,
  author       = "Yones, C. and Stegmayer, G. and Kamenetzky, L. and Milone, D. H.",
  title        = "miRNAfe: a tool for feature extraction in pre-miRNA prediction",
  booktitle    = "VI Argentinian Conference on Bioinformatics and Computational Biology",
  month        = "oct",
  year         = "2015",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2015/YSKM15"
}
@Article{MSLKC14,
  author       = "Milone, D. H. and Stegmayer, G. and López, M. G. and Kamenetzky, L. and Carrari, F.",
  title        = "Improving clustering with metabolic pathway data",
  journal      = "BMC Bioinformatics",
  number       = "101",
  volume       = "15",
  year         = "2014",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2014/MSLKC14"
}
@Article{MSKLC13,
  author       = "Milone, D. H. and Stegmayer, G. and Kamenetzky, L. and López, M. G. and Carrari, F.",
  title        = "Clustering biological data with SOMs: on topology preservation in non-linear dimensional reduction",
  journal      = "Expert Systems With Applications",
  volume       = "40",
  pages        = "3841--3845",
  year         = "2013",
  note         = "Lugar: Amsterdam",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2013/MSKLC13"
}
@Article{SMKLC12,
  author       = "Stegmayer, G. and Milone, D. H. and Kamenetzky, L. and López, M. G. and Carrari, F.",
  title        = "A biologically-inspired validity measure for comparison of clustering  methods over metabolic datasets",
  journal      = "IEEE ACM Transactions in Computational Biology and Bioinformatics",
  number       = "3",
  volume       = "9",
  pages        = "706--716",
  month        = "may",
  year         = "2012",
  keywords     = "Clustering , biological assessment , metabolic pathways. , validation measure ",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2012/SMKLC12"
}
@Article{MSKLGLC10,
  author       = "Milone, D. H. and Stegmayer, G. and Kamenetzky, L. and López, M. G. and Giovannoni, J. and Lee, Je Min and Carrari, F.",
  title        = "*omeSOM: a software for integration, clustering and visualization of transcriptional and metabolite data mined from interspecific crosses of crop plants",
  journal      = "BMC Bioinformatics",
  volume       = "4",
  pages        = "438--448",
  year         = "2010",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2010/MSKLGLC10"
}
@InBook{MSGKLC10,
  author       = "Milone, D. H. and Stegmayer, G. and Gerard, M. and Kamenetzky, L. and López, M. G. and Carrari, F.",
  title        = "Analysis and integration of biological data: a data mining approach using neural networks",
  booktitle    = "Knowledge Discovery Practices and Emerging Applications of Data Mining: Trends and New Domains",
  pages        = "287--314",
  year         = "2010",
  editor       = "A. V. Senthil Kumar",
  publisher    = "IGI Global",
  note         = "ISBN-13: 9781609600679, ISBN 1-60960-067-3, DOI: 10.4018/978-1-60960-067-9.ch014",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2010/MSGKLC10"
}
@InProceedings{KLSMGFC10,
  author       = "Kamenetzky, L. and López, M. G. and Stegmayer, G. and Milone, D. H. and Giovannoni, J. and Fernie, A. and Carrari, F.",
  title        = "Metabolic pathway reconstruction by a neural clustering",
  booktitle    = "1er Congreso Argentino de Bioinformática y Biología Computacional",
  month        = "may",
  year         = "2010",
  address      = "Buenos Aires, Argentina",
  note         = "In press.",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2010/KLSMGFC10"
}
@Article{MSGKLC09,
  author       = "Milone, D. H. and Stegmayer, G. and Gerard, M. and Kamenetzky, L. and López, M. G. and Carrari, F.",
  title        = "Métodos de agrupamiento no supervisado para la integración de datos genómicos y metabólicos de múltiples líneas de introgresión",
  journal      = "Revista Iberoamericana de Inteligencia Artificial",
  number       = "44",
  volume       = "13",
  pages        = "56--66",
  year         = "2009",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2009/MSGKLC09"
}
@InProceedings{MSGKLC09a,
  author       = "Milone, D. H. and Stegmayer, G. and Gerard, M. and Kamenetzky, L. and López, M. G. and Carrari, F.",
  title        = "Métodos de agrupamiento no supervisado para la integración de datos genómicos y metabólicos de múltiples líneas de introgresión",
  booktitle    = "X Argentine Symposium on Artificial Intelligence ({ASAI 2009})",
  pages        = "71--82",
  month        = "August",
  year         = "2009",
  address      = "Mar del Plata, Argentina",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2009/MSGKLC09a"
}
@InProceedings{SMKLC09,
  author       = "Stegmayer, G. and Milone, D. H. and Kamenetzky, L. and López, M. G. and Carrari, F.",
  title        = "Neural Network Model for Integration and Visualization of Introgressed Genome and Metabolite Data",
  booktitle    = "IEEE International Joint Conference on Neural Networks ({IJCNN})",
  pages        = "2983--2989",
  month        = "June",
  year         = "2009",
  address      = "Atlanta, USA",
  url          = "http://sinc.unl.loc/sinc/sinc-publications/2009/SMKLC09"
}